פרופ' אשל בן-יעקב - פרסומים ומאמרים

עודכן: 28.09.2017



Eshel Ben-Jacob - List of Publication Since 2000




  1. "Evolvement of Uniformity and Volatility in the Stressed Global Financial Village", Kenett,D., Raddant, M., Lux, T., Ben-Jacob, E., ., PLoS ONE Vol. 7(2): e31144 (8 pages) 





  1. "A tale of two stories: Astrocyte Regulation of Synaptic Depression and Facilitation", De Pittà, M., Volman, V., Berry, H., Ben-Jacob, E., PLoS Comput. Biol. Vol. 7(12): e1002293. doi:10.1371/journal.pcbi.1002293 (2011)
  2. "Functional Holography and Cliques in Brain activation patterns ", Jacob, Y., Papo, D., Hendler, T., Ben-Jacob, E., in "Brain Imaging" (ISBN 978-953-307-613-3). Publisher:  InTech. (2011)
  3. "Mutually Facilitated Dispersal between the Non-motile Fungus Aspergillus fumigatus and the Swarming Bacterium Paenibacillus vortex", Ingham, C. J., Kalisman, O., Finkelshtein, A., Ben-Jacob, E., PNAS Early edition 10.1073/pnas.1102097108 (2011)
  4. "Cell Motility Dynamics: A Novel Segmentation Algorithm to Quantify Multi-Cellular Bright Field Microscopy Images", Zaritsky, A., Natan, S., Horev, J., Hecht, I., Wolf, L., Ben-Jacob, E., Tsarfaty, I. PLoS ONE Vol. 6(11): e27593 (2011)
  5. "Computing with bacterial constituents cells and populations: from bioputing to bactoputing", Norris, V., Zemirline, A., Amar, P., Audinot, J. N., Ballet, P., Ben-Jacob, E., Bernot, G., Beslon, G., Cabin, A. Fanchon, E., Giavitto, J. L., Glade, N., Greussay, G., Kepes, F., Michel, O., Molina, F., Signorini, J., Stano, P., Thierry, A. R., Theory in Biosciences, Vol. 130(3): 211-28. Epub 2011 Mar 8 (2011)
  6. "Engineered neuronal circuits: A new platform for studying the role of modular topology", Shein-Idelson, M., Ben-Jacob, E., Hanein, Y., Front. Neuroeng. 4:10. Doi:10.3389/fneng.2011.00010 (2011)
  7. "The natural autoantibody repertoire in newborns and adults: a current overview", Madi, A., Bransburg-Zabary, S., Kenett, D. Y., Ben-Jacob, E., Cohen I. R., a chapter of the book Naturally Occurring Antibodies (Nabs), chapter category: Autoimmunity,  Landes Bioscience (2011)
  8. ”Smart Swarms of Bacteria-Inspired Agents with Performance Adaptable Interactions”, Shklarsh, A. Ariel, G., Schneidman, E. and Ben-Jacob, E., PLoS Comput Biol. 2011 Sep: 7(9): e1002177. Epub 2011 Sep 29 (2011)
  9. “Global and Local Features of Semantic Networks: Evidence from the Hebrew Mental Lexicon”, Kenett, Y. N., Kenett, D. Y., Ben-Jacob, E., Fuast, M., PLos ONE Vol. 6(8): e23912 (12 pages) (2011)
  10. “’Self-Assisted’ Amoeboid Navigation in Complex Enviroments”, Hecht, I., Levine, H., Rappel, W. J., Ben-Jacob, E., PLoS ONE Vol. 6(8): e21955 (12 pages) (2011)
  11. “Activated Membrane Patches Guide Chemotactic Cell Motility”, Hecht, I., Skoge, M. L., Charest, P. G., Ben-Jacob, E., Firtel, R. A., Loomis W. f., Levine, H., Rappel, W. J., PLoS Comput Biol  Vol. 7(6): e1002044 (8 pages) (2011)
  12. “The Effect of Nondialyzable Material (NDM) Cranberry Extract on Formation of Contact Lens Biofilm by Staphylococcus epidermidis, Leshem, R., Maharshak, I., Ben-Jacob, E., Ofek, I., Kremer, I., Invest. Ophthalmol. Vis. Sci. Vol. 52(7), 4929-4934 (2011)
  13. "Hidden temporal order unveiled in stock market volatility variance", Shapira, Y., Kenett, D.Y., Raviv, O., Ben-Jacob, E., AIP Advances Vol. 1(2), 022127 (14 pages) (2011)
  14. "Reduced synchronization persistence in neural networks derived from Atm-deficient mice", Levine-Small, N., Yekutieli, Z., Aljadeff, J., Boccaletti, S., Ben-Jacob, E., Barzilai, E. Frontiers in Neuroscience Vol. 5 article 46 pp 1-16 (2011)
  15. “Smart bacteria”, Ben-Jacob, E., Shapira, Y., Tauber, A. I. in “Chimera and Consciousness.  Evolution of the Sensory Self”, chapter 5, page 55. Edited by Margulis, L., Asikainen, C.A. and Krumbein, W.E., The MIT Press, Cambridge Boston (2011)
  16. "Index cohesive force analysis reveals that the US market became prone to systemic collapses since 2002". Kenett, D. Y., Shapira, Y., Madi, A., Bransburg-Zabary, S., Gur-Gershgoren, G., Ben-Jacob, E., PLoS ONE Vol. 6(4): e19378 (8 pages) (2011)
  17. "Network Theory Analysis of Antibody-Antigen Reactivity Data: The Immune Trees at Birth and Adulthood". Madi, A., Kenett, D.Y., Bransburg-Zabary, S., Merbl, Y., Quintana, F.J., Tauber, A. I., Cohen, I.R., Ben-Jacob, E., PLoS ONE Vol 6(3) e17445 (7 pages) (2011)
  18. "Analyses of antigen dependency networks unveil immune system reorganization between birth and adulthood".  Madi, A., Kenett, D.Y., Bransburg-Zabary, S., Merbl, Y., Quintana, F.J., Boccaletti, S. Tauber, A. I., Cohen, I.R., Ben-Jacob, E., Chaos Vol.  21(1) 016109 (11 pages) (2011)
  19. "Time-frequency characterization of electrocorticographic recordings of epileptic patients using frequency-entropy similarity: A comparison to other bi-variate measures". Gazit, T., Doron, I., Sagher, O., Kohrman, M.H., Towle, V.L., Teicher, M., Ben-Jacob, E ., J. Neuroscience Methods Vol. 194(2) pp 358-373 (2011)





  1. "Dynamics of stock market correlations". Kenett, D. Y., Shapira, Y., A.Madi, Bransburg-Zabary, S., G.Gur-Gershgoren, Ben-Jacob, E., Czech AUCO economic review, Vol. 4 (3) pp 330-341 (2010)
  2. "Genome sequence of the pattern forming Paenibacillus vortex bacterium reveals potential for thriving in complex environments".  Sirota-Madi, A., Olender, T., Helman, Y., Ingham, C., Brainis, I., Roth, D., Hagi, E., Brodsky, L., Leshkowitz, D., Galatenko, V., Nikolaev, V., Mugasimangalam, R.C., Bransburg-Zabary, S., Gutnick, D.L., Lancet, D., BMC Genomics Vol. 11:710 pp 1-16 (2010)
  3. "Innate Synchronous Oscillations in Freely-Organized Small Neuronal Circuits". Shein Idelson, M., Ben-Jacob, E., Hanein, Y., PLoS ONE Vol. 5(12) e14443 (2010)
  4. "Dominating Clasp of the Financial Sector Revealed by Partial Correlation Analysis of the Stock Market". Kenett, D.Y., Tumminello, M., Madi, A., Gur-Gershgoren, G., Mantegna, R.N., Ben-Jacob, E., PLoS ONE Vol. 5(12): e15032 (2010)
  5. "Revealing voxel correlation cliques by functional holography analysis of fMRI". Jacob, Y.,  Rapson, A., Kafri, M., Baruchi, I., Hendler, T., Ben-Jacob, E., Journal of Neuroscience Methods Vol. 191, pp 126–137      (2010)
  6. "Lethal protein produced in response to competition between sibling bacterial colonies". Be'er, A., Ariel, G., Kalishman, O., Helman, Y., Sirota-Madi, A., Zhang, H.P., Florin, E.L., Payne, S.M., Ben-Jacob, E., Swinney, H.L.,  PNAS, Vol. 107(14) pp 6258-6263 (2010)
  7. "Entropic effect and slow kinetics revealed in titrations of D2O-H2O solutions with different D/H ratios". Katsir, Y., Shapira, Y., Mastai, Y., Dimova, R., Ben-Jacob, E., J. Phys. Chem. B Vol. 114 pp 5755-5763 (2010)
  8. "From network structure to network reorganization: implications for adult neurogenesis". Schneider-Mizell, C. M., Parent, J. M., Ben-Jacob, E., Zochowski, M. Sander, L. M., Phys. Biol. Vol. 7(4) 046008 (2010).
  9. "Bacteria determine fate by playing dice with controlled odds". Ben-Jacob, E., Schultz, D., PNAS, Vol. 107(30) pp 13197-8 (2010)
  10. "Nonlinear Gap Junctions Enable Long-Distance Propagation of Pulsating Calcium Waves in Astrocyte Networks". Goldberg, M., De Pittà, M., Volman, V., Berry, H., Ben-Jacob, E., PLoS Comp. Biol. Vol. 6(8): e1000909 (2010)
  11. "Wrestling model of the repertoire of activity propagation modes in quadruple neural networks". Shteingart, H., , N., Baruchi I., Ben-Jacob, E., Frontiers in Computational Neuroscience Vol. 4 (25) (2010)
  12. "A binary search approach to whole-genome data analysis". Brodsky, L., Kogana, S., Ben-Jacob, E., Nevoa, E., PNAS, Vol. 107(39) pp 16893-16898 (2010)
  13. "Loss of Intrinsic Organization of Cerebellar Networks in Spinocerebellar Ataxia Type 1: Correlates with Disease Severity and Duration". Solodkin, A., Peri, E., Elinor Chen., E., Ben-Jacob, E., Gomez, C. M., Cerebellum Oct. issue DOI 10.1007/s12311-010-0214-5, Springer  (2010)
  14. “Gene Network Holography of the Soil Bacterium Bacillus subtilis”. Roth, D., Madi, A., Kenett, D.Y., Ben-Jacob, E., Chapter 10, pp 255-280 in G. Witzany (ed.), Biocommunication in Soil Microorganisms, Soil Biology Series Vol. 23 Springer-Verlag Berlin Heidelberg (2010)





  1. "RMT Assessments of the Market Latent Information Embedded in the Stocks’ Raw, Normalized, and Partial Correlations". Kenett, D.Y., Shapira, Y., Ben-Jacob, E., J. Probability and Statistics DOI:10.1155/2009/249370 (2009)
  2. "Learning from Bacteria about Natural Information Processing." Ben-Jacob, E., Annals of the New York Academy of Science Vol. 1178, pp 78-90 (2009)
  3. "Cultured Neuronal Networks Express Complex Patterns of Activity and Morphological Memory". , N., Rubinsky, L., Shein, M., Baruchi, I., Volman, V., and Ben-Jacob, E., pp 257-278 in World Scientific Lecture Notes in Complex System Vol. 10 : Handbook on Biological Networks, editors: Boccaletti, S., V. Latora, Y. Moreno. World Scientific, Singapore (2009)  
  4. "Deciding fate in adverse times: Sporulation and competence in Bacillus subtilis". Schultz, D., Wolynes, P.G., Ben-Jacob, E., Jose' Onuchic, PNAS, Vol. 106(50) pp 21027-21034 (2009)
  5. "The Index Cohesive Effect On the Stock Market Correlations". Shapira, Y., Kenett, D., Ben-Jacob, E., European Journal of Physics B EPJB Vol. 72, pp 657-669 (2009)
  6. "Locally Balanced Dendritic Integration by Short-term Synaptic Plasticity and Active Dendritic Conductances". Volman, V., Levine, H., Ben-Jacob, E., Sejnowski, T.J., J. Neurophysiology Vol. 102, pp 3234-3250 (2009)
  7. “Reverse engineering of the spindle assembly checkpoint”. Doncic, A., Ben-Jacob, E., Einav, S., Barkai, N., PLoS ONE  Vol. 4(8): 6495 (2009)
  8. "Bacterial Complexity: More is Different on all Levels". Ben-Jacob, E., pp 25-35 In “Systems Biology: The Challenge of Complexity”, Edited by Shigetada Nakanishi, Ryoichiro Kageyama and Dai Watanabe Springer Tokyo (2009)
  9. "Organization of the autoantibody repertoire in healthy newborns and adults revealed by system level informatics of antigen microarray data". Madi, A., Hecht, I., Bransburg- Zabary, S., Merbl, Y., Pick, A., Zucker-Toledano, M., Francisco, J. Quintana, Tauber, A. I., Cohen, I. R., Ben-Jacob, E., PNAS, Vol. 106(34) pp 14484-14489 (2009)
  10. "The Formation of Synchronization Cliques During Development of Modular Neural Networks". Fuchs, E., Ayali, A., Ben-Jacob, E., Boccaletti, S.,  Phys. Biol., Vol. 6(3) 036018 (12 pp) (2009)
  11. "Glutamate regulation of calcium and IP3 oscillating and pulsating dynamics in astrocytes". De Pittà, M., Goldberg M., Volman V., Berry H., Ben-Jacob E., J. Biol.  Phys., Vol. 35(4) pp 383-411 (2009)
    This article has been selected for Faculty of 1000 Biology 
    Geneviève Dupont: Faculty of 1000 Biology, 4 Sep 2009 http://www.f1000biology.com/article/id/1163674/evaluation
  12. "Deadly competition between sibling bacterial colonies". Be’er, A., Zhang, H., Florin, E.L., Payne, S.M, Ben-Jacob, E., Swinney, H., PNAS Vol. 106(20), pp 428-433 (2009)
    This article has been selected for Faculty of 1000 Biology 
    Simon Andrews: Faculty of 1000 Biology, 20 Jan 2009 http://www.f1000biology.com/article/id/1144972/evaluation 
    Paul Cotter: Faculty of 1000 Biology, 13 Feb 2009 http://www.f1000biology.com/article/id/1144972/evaluation 

  13. "Process entanglement as a neuronal anchorage mechanism to rough surfaces". Sorkin S., Greenbaum A., David-Pur M., Anava S., Ayali A., Ben-Jacob E., Hanein Y., Nanotechnology Vol. 20(1), pp 015101 (2009).
  14. "Engineered neuronal circuits shaped and interfaced with carbon nanotube microelectrodes arrays". Shein, M., Greenbaum, A., Gabay, T., Sorkin, R., David-Pur, M., Ben-Jacob, E., Hanein, Y. Biomed Microdevices Vol. 11(2), pp 495-501(2009).





  1. "The regulative role of neurite mechanical tension in network development". Anava S., Greenbaum A., Ben-Jacob E., Hanein Y., Ayali A., Biophysical Journal Vol. 96(4) pp 1661-1670 (2008).
  2. "Multimodal encoding in a simplified model of intracellular calcium signaling". De Pitta, M., Volman, V., Levine, H., Ben-Jacob, E., Cognitive Processing Vol. 10(1) pp 55-70 (2008).
  3. "Management of synchronized network activity by highly-active neurons". Shein, M., Volman, V., , N., Hanein, Y., Ben-Jacob, E., Physical Biology, Vol. 5(1-13) pp 036001(1)-036001(8) (2008).
  4. "Carbon nanotube micro-electrodes for neuronal interfacing". Ben-Jacob, E., Hanein, Y., Journal of Materials Chemistry (Highlight) Vol. 18, pp 5181-5186 (2008)
  5. "The emergence and properties of mutual synchronization in in vitro coupled cortical networks". Baruchi, I., Volman, V., , N., Shein, M., Ben-Jacob, E., European Journal of Neuroscience (EJN) Vol. 28, pp 1825-1835, (2008).
  6. "Genome Holography: Deciphering Function-Form Motifs from Gene Expression Data". Madi, A., Friedman, Y., Roth, D., Regev, T., Bransburg-Zabary, S., Ben-Jacob, E., PLoSONE, Vol. 3(7) pp 1-14 (2008).
  7. "Social behavior of bacteria: from physics to complex organization". Ben-Jacob, E., The European Physics Journal B (EPJB) Vol. 65, pp 315-322 (2008).
  8. "Pulsating–gliding transition in the dynamics of levitating liquid nitrogen droplets". Snezhko, A., Ben-Jacob, E., S Aronson, I., New Journal of Physics Vol. 10(4), pp 043034(1) – 043034(12) (2008).
  9. "Electrochemical deposition in rf-irradiated solutions – A manifestation of induced long range order?". Katsir, Y., Miller, L., Scolnik, Y., Aharonov, Y., Ben-Jacob, E., ECS Transactions Vol. 11(20), pp 71-81 (2008)
  10. "Identifying repeating motifs in the activation of synchronized bursts in cultured neuronal networks". , N., Ben-Jacob, E., Journal of Neuroscience methods Vol. 170, pp 96-110 (2008).
  11. "Coexistence of amplitude and frequency modulations in intracellular calcium dynamics". De Pitta`, M., Volman, V., Levine, H., Pioggia, G., De Rossi, D., Ben-Jacob, E., Physical Review E Rapid Communication Vol. 77, pp 030903(1) - 030903(4) (2008).
  12. "Emergence of agent swarm migration and vortex formation through inelastic collisions".  Ben-Jacob, E., Grossman, D., Aranson, I. S., New journal of Physics Vol. 10, pp 026036(1) - 026036(11) (2008).
  13. "Swarming and complex pattern formation in Paenibacillus vortex studied by imagine and tracking cells". Ingham, J., Colin, Ben-Jacob, E., BMC microbiology Vol. 8(36) pp 1-16 (2008)
  14. "Spatio-temporal motifs 'remembered' in neuronal networks following profound hypothermia". Rubinsky, L., , N., Lavee, J., Frenk, H., Ben-Jacob, E., Neural Networks Vol. 21(9), pp 1232-1237 (2008).





  1. “Detecting and localizing the foci in human epileptic seizures”. Ben-Jacob, E., Boccaletti, S., Pomyalov A., Procaccia I., Towle, V. L., Chaos Vol. 17(4), pp 043113(1)- 043113(8) (2007).
  2. “Mapping and assessment of epileptogenic foci using frequency-entropy templates”. Ben-Jacob, E., Doron, I., Gazit, T., Rephaeli, E., Sagher, O., Towle, V.L., Physical Review E Vol. 76, pp 051903(1) – 051903(8) (2007).
  3. “Correlated phenotypic transitions to competence in bacterial colonies”. Hecht, I., Ben-Jacob, E., Levine, H., Physical Review E Rapid Communication Vol. 76, pp 040901(1) - 040901(5) (2007).
  4. "Target-specific and global effectors in gene regulation by MicroRNA". Levine, E., Ben-Jacob, E., Levine, H., Biophysical journal, Vol. 93, pp. L52-L54 (2007).
  5. "Molecular level stochastic model for competence cycles in Bacillus subtilis". Schultz, D., Ben-Jacob, E., Onuchic, J.N., Wolynes, P., PNAS Vol. 104(45), pp 17582-17587 (2007).
  6. "Co-emergence of regularity and complexity during neural network development".      Fuchs, E., Ayali, A., Robinson, A, Hulata, E., Ben-Jacob, E., Developmental Neurobiology Vol. 67, pp 1802-1814 (2007).
  7. "The function of intersegmental connections in determining temporal characteristics of the spinal cord rhythmic output".  Ayali, A., Fuchs, E., Ben-Jacob, E., Cohen, A., Neuroscience Vol. 147(1), pp 236-246 (2007).
  8. "Study of hypothermia on cultured neuronal networks using multi-electrode arrays". Rubinsky, L., , N., Baruchi, I., Ben-Jacob, E., Lavee, J., Shein, M., Frenk, H., Journal of Neuroscience Methods, Vol. 160(2), pp 288-293 (2007).
  9. "Electro-chemical and biological properties of carbon nanotube based multi-electrode". Gabay, T., Ben-David, M., Kalifa, I., Sorkin, R., Abrams, Z., Ben-Jacob, E., Hanein, Y., Nanotechnology, Vol. 18(3), pp 035201(1) - 035201(6) (2007).
  10. “Calcium and Synaptic dynamics underlying rererberatory activity in Neuronal networks”. Volman,V., Gerkin, R.C., Lau, M-P., Ben-Jacob, E., Guo-Qiang Bi. Physical Biology Vol. 4, pp 91-103 (2007).
  11. "The Astrocyte as a Gatekeeper of Synaptic Information Transfer”. Volman, V., Ben-Jacob, E., Levine, H., Neural Computation Vol. 19, pp 303-326 ((2007.
  12. “Towards Neuro-Memory-Chip: Imprinting multiple memories in cultured neural networks”. Baruchi, I., Ben-Jacob, E., Physical Review E Rapid Communication Vol. 75, pp 050901(1)- 050901(4) (2007).
  13. “The Effect of rf-irradiation on electrochemical deposition and its stabilization by nanoparticle doping”. Katsir, Y., Miller, L., Aharonov, Y., Ben-Jacob, E., Journal of the Electrochemical Society, Vol. 154(4), pp D249-D259 (2007).





  1. “Noise resistance in the spindle assembly checkpoint”. Doncic, A., Ben-Jacob, E., Barkai, N., Molecular Systems Biology Vol. 2 Article number 27 pp 1-6 (2006).
  2. “Time-invariant person-specific frequency templates in human brain activity”. Doron, I., Hulata, E., Baruchi, I., Towle, V.L., Ben-Jacob, E., Physical Review Letters Vol. 96, pp 258101(1)- 258101(4) (2006).
  3. “Harnessing Bacterial Intelligence: A Prerequisite for Human Habitation of Space”. Ben-Jacob, E., Chapter 13 in Beyond Earth: The future of Humans in Space, Edited by Bob Krone, Apogee books (2006).
  4. “Functional Holography Analysis: Simplifying the complexity of dynamical networks”. Baruchi, I., Grossman, D., Volman, V., Hunter, J., Towle, V. L., Ben-Jacob, E., in Chaos Focus Issue on “Stability and Pattern Formation in Networks of Dynamical Systems” edited by L. Pecora and Boccaletti, S.., Vol.16, pp 015112 (2006).
  5. “Collective plasticity and individual stability in cultured neural networks”.  , N., Volman, V., Ben-Jacob, E., Neurocomputing Vol. 69, pp 1150-1154 (2006).
  6. "Adult, gender-specific behavior characterized by elevated neuronal functional complexity". Fuchs, E., Hulata, E., Ben-Jacob, E., Ayali A., NeuroReport Vol. 17, pp1153-1158 (2006).





  1. "Self-engineering capabilities of bacteria". Ben-Jacob, E., Levine, H., Journal of the Royal society interface Vol. 3(6), pp 197-214 (2005).
  2. “Seeking the Foundations of Cognition in Bacteria: From Schrödinger’s Negative Entropy to Latent Information”. Ben-Jacob, E., Shapira, Y., Tauber, A. I., Physica A Vol. 359, pp 495-524, (2005).
  3. "Topological classification of biological computing networks". Blinder, P., Baruchi, I., Volman, V., Levine, H., Baranes D., Ben-Jacob, E., J. Natural Computing Vol. 4(4), pp 339-361 (2005).
  4. "Self-regulated complexity in neural networks". Hulata, E., Volman V., Ben-Jacob, E., J. Natural Computing Vol. 4(4), pp 363-386 (2005).
  5. “Bacteria harnessing complexity”. Ben-Jacob, E., Aharonov, Y., Shapira, Y., Biofilms Vol. 1, pp 239–263 (2005).
  6. “Evaluating putative mechanisms of the mitotic spindle checkpoint". Doncic, A., Ben-Jacob, E., Barkai, N., PNAS, Vol. 102, pp 6332–6337 (2005).
  7. "Manifestation of function-follow-form in cultured neuronal networks". Volman, V., Baruchi, I., Ben-Jacob, E., Physical Biology Vol. 2, pp 98-110 (2005).
  8. "Functional Holography of Complex Networks Activity from Cultures to the Human Brain". Baruchi, I., Towle, V.L., Ben-Jacob, E., Complexity Vol. 10(3), pp 38-51 (2005).
  9. "Engineered self-organization of neural networks using carbon nanotube clusters".  Gabay, T., Jakobs, E., Ben-Jacob, E., Hanein, Y., Physica A  Vol. 350(2-4), pp 611–621 (2005).
  10. "A Two-phase growth strategy in cultured neuronal networks as reflected by the distribution of neurite branching angles". Shefi O., Golebowicz, S., Ben-Jacob E., Ayali, A., Journal of Neurobiology Vol. 62(3), pp 361-368 (2005).
  11. "Controlling an Oscillating Jackson-Type Network Having State-Dependent Service Rates". Arazi, A., Ben-Jacob, E., Yechiali, U., Mathematical Methods of Operations Research, Vol. 62(3), pp 453-466 (2005).





  1. “Meaning-Based Natural Intelligence vs. Information-Based Artificial Intelligence”. Ben-Jacob, E., Shapira, Y., In "Cradle of Creativity" edited by Chemi Ben-Noon, Shaarei Mishpat, Israel. (2004).
  2. “Des fleurs de Bacteries”. Ben-Jacob, E., Levine, H. in Les formes de la vie, Pour La Science  pp 78-83 (2004).
  3. “Bacterial Linguistic Communication and Social Intelligence”. Ben-Jacob, E., Becker, I., Shapira, Y., Levine, H.,  Trends in Microbiology Vol. 12(8), pp 366-372 (2004).
  4. “Bridging Genetic Netowrks and Queuing Theory”. Arazi, A., Ben-Jacob, E., Yechiali, U., Physics A Vol. 332, pp 585-616 (2004).
  5. "Functional Holography of Recorded Neuronal Networks Activity". Baruchi, I., Ben-Jacob. E., Neuroinformatics Vol. 2(3), pp 333-352, (2004).
  6. "Self-regulated homoclinic chaos in neural networks activity". Volman, V., Baruchi I., Ben-Jacob. E., Experimental Chaos, Edited by Boccaletti S. et al., American Institute of Physics, Melville NY ,pp 197-209 (2004)
  7. "Modeling of Synchronized Bursting Events: The Importance of in homogeneity". Persi, E., Horn, D., Volman, V., Segev, R., Ben-Jacob, E., Neural Computation Vol. 16, pp 2577-2595 (2004)
  8. "Contextual Regularity and Complexity of Neuronal Activity: from Stand-Alone Cultures to Task-Performing Animals". Ayali A., Fuchs E., Zilberstein Y., Shefi O., Hulata E., Baruchi I., Ben-Jacob, E., Complexity, Vol. 9(6), pp 25-32, (2004).
  9. "Engineered Self Organization in natural and man-made Systems". , N., Gabay, T., Katsir, Y., Shapira Y., Ben-Jacob, E., Continuum Models and Discrete Systems, Edited by Bergman D. Kluwer Academic Publishers, Netherlands, pp 187-205, (2004). 
  10. "Physical schemata underlying biological pattern formation-examples, issues and strategies". Levine H., Ben-Jacob, E., Physical Biology Vol. 1, pp 14-22 (2004).
  11. "Biophysical constraints on neuronal branching." Shefi, O., Harel, A., Chklovskii, D.B., Ben-Jacob, E., Ayali, A., Neurocomputing Vol. 58-60, pp 487-495 (2004).
  12. "Self-Regulated Complexity in Cultured Neuronal Networks". Hulata, E., Baruchi, I., Segev, R., Shapira, Y., Ben-Jacob, E., Physical Review Letters Vol. 92(19), pp 198105(1)-198105(4), (2004).
  13. "Neural modeling of synchronized bursting events". Persi, E., Horn, D., Segev, R., Ben-Jacob, E., Volman. V., Neurocomputing Vol. 58, pp 179 –184 (2004).
  14. "Hidden Neuronal Correlations in Cultured Networks". Segev, R., Baruchi, I., Hulata, E. & Ben-Jacob, E., Physical Review Letters Vol. 92(11), pp 118102(1)-118102(4) (2004).
  15. "Generative Modeling of Regulated Activity in Cultured Neuronal Networks". Volman, V., Baruchi, I., Persi, E., Ben-Jacob, E.,  Physica A Vol. 335, pp 249-278 (2004).





  1. “Communication - Based Regulated Freedom of Response in Bacterial Colonies”. Ben-Jacob, E., Shapira, Y., Becker, I., , N., Volman, V., Hulata, E., and Baruchi, I., Physica A Vol. 330, pp 218-231 (2003).
  2. “Bursts of sectors in expanding bacterial colonies as a possible model for tumor growth and metastases”. Ron, I. G., Golding, I., Mercer, B. L., Ben-Jacob, E., Physica A Vol. 320, pp 485-96 (2003).
  3. Bacterial Self-Organization: Co-Enhancement of Complexification and Adaptability in a Dynamic Environment”. Ben-Jacob, E., Philosophical Transactions of the Royal Society Lond. A Vol. 361, pp 1283-1312 (2003). Theme volume of 2002 Nobel Symposium on "Self-organization: the quest for the origin and evolution of structures".
  4. “Evolvable Hardware: Genetic Search in a Physical Realm”. , N., Segev, R., Ben-Jacob, E., Physica A Vol. 326, pp 265-285 (2003).
  5. "Formation of Electrically Active Clusterized Neural Networks". Segev, R., Benveniste, M., Shapira, Y., Ben-Jacob. E., Physical Review Letters Vol. 90(16), pp 168101(1)-168101(4) (2003).





  1. "Long term behavior of lithographically prepared in vitro neuronal networks". Segev, R., Benveniste, M., Hulata, E., Cohen, N., Palevski, A., Kapon, E., Shapira, Y., Ben-Jacob, E., Physical Review Letters Vol. 88(11), pp 118102(1)-118102(4) (2002).
  2. "A Method for spike sooting and detection based on wavelet packets and shannons mutual information". Hulata, E., Segev, R., Ben-Jacob, E., Journal of Neuroscience methods Vol. 117(1), pp 1-12 (2002).
  3. "Morphological characterization of in vitro neural networks". Shefi, O., Golding,I., Segev, R., Ben-Jacob, E., Ayali, A., Physical Review Vol. 66(2 pt 1), pp 021905(1)-021905(5) (2002).
  4. "Sub-Micromorphology of the epicuticle of hornets: AFM studies". Ishay, JS., Litinetsky, L., Pertsis, V., Barkay, Z., Ben-Jacob, E., Journal of electron microscopy Vol. 51(1), pp 79-86 (2002).
  5. "Growth morphology of two-dimensional insect neural networks". Shefi, O., Ben-Jacob, E., Ayali, A., Neurocomputing, Vol. 44-46, pp 635-643 (2002).
  6. "Self-Organization of two-dimensional insect neural networks". Ayali, A., Shefi, O., Ben-Jacob, E., In: Experimental Chaos 2001. (EdBoccaletti, S., S. Gluckmam, B. J. Kurths, J. Pecora, L. M. and Spano, M. L.). American Institute of Physics Vol. 622, pp 465-475 (2002).
  7. "When order comes naturally". Ben-Jacob, E., Nature, Vol. 415, pp 370 (2002).





  1. "A Quantitative study of the dynamics of adaptive mutations appearance". Golding, I., Drossel, B., Shapira, Y., Ben-Jacob, E., Physica A, Vol. 294, pp 195-212 (2001).
  2. "The Artistry of nature". Ben-Jacob, E., Levine, H., Nature Vol. 409, pp 985-986 (2001).
  3. "Observations and modeling of synchronized bursting in two-dimensional neural networks". Segev, R., Shapira, Y., Benveniste, M., Ben-Jacob, E., Physical Review E Vol. 64, pp 011920(1)-011920(9) (2001).
  4. "Spontaneous synchronized bursting in2D neural networks". Segev, R., Ben-Jacob, E., Physica A Vol. 302, pp 64-69 (2001).
  5. "Atomic force pulling: probing the local elasticity of the cell membrane". Scheffer, L., Bitler, A., Ben-Jacob, E., Kornstein, R., European Biophysics Journal with Biophysics letters Vol. 30(2), pp 83-90 (2001).
  6. "Biofluiddynamics of lubricating bacteria". Cohen, I., Golding, I., Ron, G., Ben-Jacob, E., Mathematical Methods in the applied science Vol. 24(17-18), pp 1429-1468 (2001).
  7. "Chemical waves and internal energy during cooperative self-wiring of neural nets". Segev, R., Ben-Jacob, E., Neurocomputing Vol. 38-40, pp 875-879 (2001).





  1. "Generic modeling of chemotactic based self-wiring of neural networks". Segev, R., Ben-Jacob, E., Neural Networks Vol. 13(2), pp 185-199 (2000).
  2. "Bacterial cooperative organization under antibiotic stress". Ben-Jacob, E., Cohen, I., Golding, I., Gutnick, D., Tcherpakov, M., Helbing, D., Ron, I., Physica A Vol. 282, pp 247-282 (2000).
  3. "Detection and sorting of neural spikes using wavelet packets". Hulata, E., Segev, R., Shapira,Y., Benveniste, M., Ben-Jacob, E., Physical Review Letters Vol. 85, pp 4637-4640 (2000).
  4. "Cooperative self-organizations of microorganisms". Ben-Jacob, E., Cohen, I., Levine, H., Advances in Physics Vol. 49(4), pp 395-554 (2000).
  5. "Modeling branching and chiral colonial patterning of lubricating bacteria". Ben-Jacob, E., Cohen, I., Golding, I., Kozovsky, Y., Mathematical Models for Biological pattern information, IMA Vol. 121, pp 211-254 (2000).
  6. "From branching to nebula patterning during colonial development of the Paenibacillus alvei bacteria". Cohen, I., Ron, I. G., Ben-Jacob, E., Physica A, Vol. 286(1-2), pp 321-336 (2000).
  7. "Conformation changes and folding of proteins mediated by Davidov's soliton". Caspi, S., Ben-Jacob, E., Physical Review Letters, Vol. 272 (1-2), pp 124-129 (2000).




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